TSS: Rfhg 101290.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000390394.3)
|all_trans=AB977838:0 EF101778:0 AB306218:0 M97719:0 LR800361:0 LR800362:0 LR800382:0 LR800383:0 LR800380:0 LR800379:0 LR800378:0 LR800373:0 LR800360:0 LR800371:0 LR800375:0 LR800376:0 LR800372:0 LR800377:0 LR800291:0 LR800374:0 AB306216:0 AB305958:0 AB306164:0 LR800381:0 AB306170:0 AB305849:0 AB306213:0 AB306173:0 M97721:8 M97717:12 AB306131:13 AB306254:-15 AB306180:-15 X74852:16 M12886:16 M13840:17 ENST00000390394.3:-18 LP896469:-18 AB306142:-18 AB306133:18 AB305930:-19 AB306182:-20 AB977932:-20 AB306189:-23 D13082:36 D13087:36 D13088:36 M14263:36 AF043182:36 AY232285:36 GQ179995:36 M13842:41 AB749921:-48 AY373824:161 AB306140:402 AB977971:402 AB977817:402 AB978257:402 AB306197:404 AB977639:409 AF020638:420 AB977777:433 M15222:439 AB978002:470 AB977687:497
|annotation=intron (NM_001363538, intron 11 of 11)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D4041198,EH38E2597607)
|ccre_description=PLS,CTCF-bound (EH38D4041198,EH38E2597607)
|chr=chr7
|chr=chr7
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=TR_V_gene-promoter-TSS (ENST00000390394.3)
|detailed_annotation=intron (NM_001363538, intron 11 of 11)
|distance=0
|distance=0
|distance_to_tss=30
|distance_to_tss=-39620
|end=142626691
|end=142626691
|entrez_id=ENSG00000211747
|entrez_id=100463482
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.520000
|gc_percent=0.520000
|gene_alias=
|gene_alias=HN6
|gene_description=
|gene_description=MT-RNR2 like 6
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=TR_V_gene
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000390394.3
|nearest_ensembl=ENSG00000270672
|nearest_refseq=
|nearest_promoter_id=NM_001190487
|nearest_unigene=ENST00000390394
|nearest_refseq=NM_001190487
|nearest_transcripts=M97721:8 M97717:12 AB306131:13 AB306254:-15 AB306180:-15 X74852:16 M12886:16 M13840:17 ENST00000390394.3:-18 LP896469:-18 AB306142:-18 AB306133:18 AB305930:-19 AB306182:-20 AB977932:-20 AB306189:-23 D13082:36 D13087:36 D13088:36 M14263:36 AF043182:36 AY232285:36 GQ179995:36 M13842:41 AB749921:-48 AY373824:161 AB306140:402 AB977971:402 AB977817:402 AB978257:402 AB306197:404 AB977639:409 AF020638:420 AB977777:433 M15222:439 AB978002:470 AB977687:497
|nearest_unigene=
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=142626666
|start=142626667
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 11:30, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_101290.1
Species:human
Chr:chr7
Start:142626667
End:142626691
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4041198,EH38E2597607)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB977838:0
EF101778:0
AB306218:0
M97719:0
LR800361:0
LR800362:0
LR800382:0
LR800383:0
LR800380:0
LR800379:0
LR800378:0
LR800373:0
LR800360:0
LR800371:0
LR800375:0
LR800376:0
LR800372:0
LR800377:0
LR800291:0
LR800374:0
AB306216:0
AB305958:0
AB306164:0
LR800381:0
AB306170:0
AB305849:0
AB306213:0
AB306173:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • M97721:8
  • M97717:12
  • AB306131:13
  • AB306254:-15
  • AB306180:-15
  • X74852:16
  • M12886:16
  • M13840:17
  • ENST00000390394.3:-18
  • LP896469:-18
  • AB306142:-18
  • AB306133:18
  • AB305930:-19
  • AB306182:-20
  • AB977932:-20
  • AB306189:-23
  • D13082:36
  • D13087:36
  • D13088:36
  • M14263:36
  • AF043182:36
  • AY232285:36
  • GQ179995:36
  • M13842:41
  • AB749921:-48
  • AY373824:161
  • AB306140:402
  • AB977971:402
  • AB977817:402
  • AB978257:402
  • AB306197:404
  • AB977639:409
  • AF020638:420
  • AB977777:433
  • M15222:439
  • AB978002:470
  • AB977687:497
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-39620
Nearest PromoterID:NM_001190487
Entrez ID:100463482
Nearest Unigene:
Nearest Refseq:NM_001190487
Nearest Ensembl:ENSG00000270672
Gene Name:
Gene Alias:HN6
Gene Type:protein-coding
CpG%:0.000000
GC%:0.520000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "M97721:8 M97717:12 AB306131:13 AB306254:-15 AB306180:-15 X74852:16 M12886:16 M13840:17 ENST00000390394.3:-18 LP896469:-18 AB306142:-18 AB306133:18 AB305930:-19 AB306182:-20 AB977932:-20 AB306189:-23 D13082:36 D13087:36 D13088:36 M14263:36 AF043182:36 AY232285:36 GQ179995:36 M13842:41 AB749921:-48 AY373824:161 AB306140:402 AB977971:402 AB977817:402 AB978257:402 AB306197:404 AB977639:409 AF020638:420 AB977777:433 M15222:439 AB978002:470 AB977687:497" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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