TSS: Rfhg 101741.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
| | |all_trans=ENST00000307003.3:0 NM_145304.4:0 JF432437:155 KJ895810:155 BC021251:-196 | ||
|annotation=promoter-TSS (NM_145304) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_145304) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=0 | ||
|end=148590771 | |end=148590771 | ||
|entrez_id= | |entrez_id=202865 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.272727 | |gc_percent=0.272727 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=chromosome 7 open reading frame 33 | ||
|gene_id=202865 | |gene_id=202865 | ||
|gene_name=chromosome 7 open reading frame 33 | |gene_name=chromosome 7 open reading frame 33 | ||
| Line 19: | Line 20: | ||
|gene_symbol=C7orf33 | |gene_symbol=C7orf33 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:21724 | |hgnc_mgi_id=HGNC:21724 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000170279 | ||
|nearest_refseq= | |nearest_promoter_id=NM_145304 | ||
|nearest_unigene= | |nearest_refseq=NM_145304 | ||
|nearest_transcripts=JF432437:155 KJ895810:155 BC021251:-196 | |||
|nearest_unigene=Hs.352212 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=148590761 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 11:37, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_145304 |
| Entrez ID: | 202865 |
| Nearest Unigene: | Hs.352212 |
| Nearest Refseq: | NM_145304 |
| Nearest Ensembl: | ENSG00000170279 |
| Gene Name: | chromosome 7 open reading frame 33 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.272727 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.