TSS: Rfhg 101780.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000364228.1:0 NR_004391.1:0 K01562:0 | ||
|annotation=promoter-TSS (NR_130107) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4044995,EH38E2599786) | |ccre_description=PLS,CTCF-bound (EH38D4044995,EH38E2599786) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.025974 | |cpg_percent=0.025974 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_130107) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=26 | |distance_to_tss=26 | ||
|end=148987261 | |end=148987261 | ||
|entrez_id= | |entrez_id=6084 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.435897 | |gc_percent=0.435897 | ||
|gene_alias= | |gene_alias=HY1{{!}}Y1 | ||
|gene_description= | |gene_description=RNA, Ro60-associated Y1 | ||
|gene_id=6084 | |gene_id=6084 | ||
|gene_name=RNA, Ro60-associated Y1 | |gene_name=RNA, Ro60-associated Y1 | ||
| Line 19: | Line 20: | ||
|gene_symbol=RNY1 | |gene_symbol=RNY1 | ||
|gene_synonyms=hY1 | |gene_synonyms=hY1 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:10242 | |hgnc_mgi_id=HGNC:10242 | ||
|nearest_ensembl= | |methods=ReCappable-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000201098 | ||
|nearest_refseq= | |nearest_promoter_id=NR_004391 | ||
|nearest_unigene= | |nearest_refseq=NR_004391 | ||
|nearest_transcripts= | |||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA548673 | |||
|species=human | |species=human | ||
|start= | |start=148987184 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 11:38, 13 March 2025
Basic information about the TSS
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| Source datasets | PRJNA548673 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ReCappable-seq | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4044995,EH38E2599786) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NR_004391 |
| Entrez ID: | 6084 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_004391 |
| Nearest Ensembl: | ENSG00000201098 |
| Gene Name: | RNA, Ro60-associated Y1 |
| Gene Alias: | HY1|Y1 |
| Gene Type: | ncRNA |
| CpG%: | 0.025974 |
| GC%: | 0.435897 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.