TSS: Rfhg 102738.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans= | ||
|annotation=intron (NM_130842, intron 1 of 21) | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D4053098,EH38E2605094) | |ccre_description=dELS (EH38D4053098,EH38E2605094) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_130842, intron 1 of 21) | ||
|distance= | |distance= | ||
|distance_to_tss=100779 | |distance_to_tss=100779 | ||
|end=158432053 | |end=158432053 | ||
|entrez_id= | |entrez_id=693180 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=MIRN595{{!}}hsa-mir-595 | ||
|gene_description= | |gene_description=microRNA 595 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE{{!}}TIF-seq2{{!}}ReCappable-seq{{!}}C1CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000207637 | ||
|nearest_refseq= | |nearest_promoter_id=NR_030325 | ||
|nearest_unigene= | |nearest_refseq=NR_030325 | ||
|nearest_transcripts= | |||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start= | |start=158432016 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 11:55, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA615891|PRJNA548673|PRJDB5282 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TIF-seq2|ReCappable-seq|C1CAGE | |||||||||||||||
| TSS cluster detected* | 5 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D4053098,EH38E2605094) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 100779 |
|---|---|
| Nearest PromoterID: | NR_030325 |
| Entrez ID: | 693180 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030325 |
| Nearest Ensembl: | ENSG00000207637 |
| Gene Name: | |
| Gene Alias: | MIRN595|hsa-mir-595 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |