TSS: Rfhg 102997.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000654884.1:0 ENST00000659324.1:0 ENST00000655416.1:0 ENST00000519393.6:0 ENST00000523971.5:0 ENST00000517984.6:0 ENST00000517357.5:0 ENST00000658181.1:0 ENST00000665048.1:0 ENST00000654513.1:0 ENST00000664965.1:0 ENST00000655522.1:0 NR_125425.1:0 NR_125426.1:0 AK128880:0 ENST00000520570.2:-8 ENST00000666066.1:31 ENST00000520842.6:-40 ENST00000671533.1:-123 | ||
|annotation=promoter-TSS (NR_125425) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D4056168,EH38E2607110) | |ccre_description=PLS (EH38D4056168,EH38E2607110) | ||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.108108 | |cpg_percent=0.108108 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_125425) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=16 | ||
|end=2728454 | |end=2728454 | ||
|entrez_id= | |entrez_id=101927815 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.552632 | |gc_percent=0.552632 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC101927815 | ||
|gene_id=101927815 | |gene_id=101927815 | ||
|gene_name=long intergenic non-protein coding RNA 3021 | |gene_name=long intergenic non-protein coding RNA 3021 | ||
| Line 19: | Line 20: | ||
|gene_symbol=LINC03021 | |gene_symbol=LINC03021 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:56149 | |hgnc_mgi_id=HGNC:56149 | ||
|nearest_ensembl= | |methods=CAGE{{!}}RAMPAGE{{!}}oligo_capping | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000254319 | ||
|nearest_refseq= | |nearest_promoter_id=NR_125425 | ||
|nearest_unigene= | |nearest_refseq=NR_125423 | ||
|nearest_transcripts=ENST00000520570.2:-8 ENST00000666066.1:31 ENST00000520842.6:-40 ENST00000671533.1:-123 | |||
|nearest_unigene=Hs.571467 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA401781 | |||
|species=human | |species=human | ||
|start= | |start=2728417 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=AK128880 | |transcript_name=AK128880 | ||
|tss_cluster_detected=4 | |||
|tss_id=rfhg_102997.1 | |tss_id=rfhg_102997.1 | ||
|tss_id_v3=hg_91599.1 | |tss_id_v3=hg_91599.1 | ||
Latest revision as of 11:59, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA401781 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|RAMPAGE|oligo_capping | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D4056168,EH38E2607110) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NR_125425 |
| Entrez ID: | 101927815 |
| Nearest Unigene: | Hs.571467 |
| Nearest Refseq: | NR_125423 |
| Nearest Ensembl: | ENSG00000254319 |
| Gene Name: | long intergenic non-protein coding RNA 3021 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.108108 |
| GC%: | 0.552632 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.