TSS: Rfhg 1076.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=5' UTR (NM_001561, exon 2 of 9) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D2123011,EH38E1315570) | |ccre_description=PLS (EH38D2123011,EH38E1315570) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.020408 | |cpg_percent=0.020408 | ||
|detailed_annotation= | |detailed_annotation=5' UTR (NM_001561, exon 2 of 9) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=2328 | ||
|end=7940862 | |end=7940862 | ||
|entrez_id= | |entrez_id=3604 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.540000 | |gc_percent=0.540000 | ||
|gene_alias= | |gene_alias=4-1BB{{!}}CD137{{!}}CDw137{{!}}ILA | ||
|gene_description= | |gene_description=TNF receptor superfamily member 9 | ||
|gene_id=3604 | |gene_id=3604 | ||
|gene_name= | |gene_name=TNFRSF9 | ||
|gene_source=HGNC:11924 | |gene_source=HGNC:11924 | ||
|gene_symbol=TNFRSF9 | |gene_symbol=TNFRSF9 | ||
|gene_synonyms=4-1BB CD137 | |gene_synonyms=4-1BB CD137 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:11924 | |hgnc_mgi_id=HGNC:11924 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000049249 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001561 | ||
|nearest_unigene= | |nearest_refseq=NM_001561 | ||
|nearest_unigene=Hs.86447 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914 | |||
|species=human | |species=human | ||
|start= | |start=7940813 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 16:57, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2123011,EH38E1315570) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2328 |
|---|---|
| Nearest PromoterID: | NM_001561 |
| Entrez ID: | 3604 |
| Nearest Unigene: | Hs.86447 |
| Nearest Refseq: | NM_001561 |
| Nearest Ensembl: | ENSG00000049249 |
| Gene Name: | TNFRSF9 |
| Gene Alias: | 4-1BB|CD137|CDw137|ILA |
| Gene Description: | TNF receptor superfamily member 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.020408 |
| GC%: | 0.540000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.