TSS: Rfhg 114316.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_014314) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4185364,EH38E2690005) | |ccre_description=PLS,CTCF-bound (EH38D4185364,EH38E2690005) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.078947 | |cpg_percent=0.078947 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_014314) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-29 | ||
|end=32526263 | |end=32526263 | ||
|entrez_id= | |entrez_id=23586 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.636364 | |gc_percent=0.636364 | ||
|gene_alias= | |gene_alias=RIG-I{{!}}RIG1{{!}}RIGI{{!}}RLR-1{{!}}SGMRT2 | ||
|gene_description= | |gene_description=DExD/H-box helicase 58 | ||
|gene_id=23586 | |gene_id=23586 | ||
|gene_name= | |gene_name=DDX58 | ||
|gene_source=HGNC:19102 | |gene_source=HGNC:19102 | ||
|gene_symbol=RIGI | |gene_symbol=RIGI | ||
|gene_synonyms=DKFZp434J1111 FLJ13599 RIG-1 RIG-I RIG1 | |gene_synonyms=DKFZp434J1111 FLJ13599 RIG-1 RIG-I RIG1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:19102 | |hgnc_mgi_id=HGNC:19102 | ||
|nearest_ensembl= | |methods=NETCAGE{{!}}CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000107201 | ||
|nearest_refseq= | |nearest_promoter_id=NM_014314 | ||
|nearest_unigene= | |nearest_refseq=NM_014314 | ||
|nearest_unigene=Hs.190622 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start= | |start=32526187 | ||
|strand=- | |strand=- | ||
|tata_box=34(CGGCTTTAAAGC,-,0.00) | |tata_box=34(CGGCTTTAAAGC,-,0.00) | ||
|transcript_name=ENST00000379883.3 ENST00000379868.6 ENST00000679771.1 ENST00000680733.1 ENST00000679859.1 BC070029 AK315040 AK301678 BX647917 | |transcript_name=ENST00000379883.3 ENST00000379868.6 ENST00000679771.1 ENST00000680733.1 ENST00000679859.1 BC070029 AK315040 AK301678 BX647917 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_114316.1 | |tss_id=rfhg_114316.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A2A376 B4DWT9 O95786 | |uniprot_id=A2A376 B4DWT9 O95786 | ||
}} | }} |
Latest revision as of 19:00, 6 December 2023
Basic information about the TSS
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Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
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Protocol | NETCAGE|CAGE | |||||||||||||
TSS cluster detected* | 2 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D4185364,EH38E2690005) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -29 |
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Nearest PromoterID: | NM_014314 |
Entrez ID: | 23586 |
Nearest Unigene: | Hs.190622 |
Nearest Refseq: | NM_014314 |
Nearest Ensembl: | ENSG00000107201 |
Gene Name: | DDX58 |
Gene Alias: | RIG-I|RIG1|RIGI|RLR-1|SGMRT2 |
Gene Description: | DExD/H-box helicase 58 |
Gene Type: | protein-coding |
CpG%: | 0.078947 |
GC%: | 0.636364 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): | 34(CGGCTTTAAAGC,-,0.00) |
TSS expression
Expression data not found.