TSS: Rfhg 114328.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=KJ891678:4 CR456920:5 AF035840:-61 BC029247:-62 AK289702:-71 AF067167:-88 BC016708:-89 ENST00000379847.8:-92 ENST00000350021.2:-92 NM_002493.5:-92 NM_182739.3:-92 NM_001199987.2:-92 BC009801:-92 ENST00000366466.5:-117 | ||
|annotation=promoter-TSS (NM_002493) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4185401,EH38E2690035) | |ccre_description=PLS,CTCF-bound (EH38D4185401,EH38E2690035) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.500000 | |cpg_percent=0.500000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_002493) | ||
|distance=4 | |distance=4 | ||
|distance_to_tss=93 | |distance_to_tss=93 | ||
|end=32573067 | |end=32573067 | ||
|entrez_id= | |entrez_id=4712 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=B17{{!}}CI | ||
|gene_description= | |gene_description=NADH:ubiquinone oxidoreductase subunit B6 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=NETCAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000165264 | ||
|nearest_refseq= | |nearest_promoter_id=NM_182739 | ||
|nearest_unigene= | |nearest_refseq=NM_002493 | ||
|nearest_transcripts=CR456920:5 AF035840:-61 BC029247:-62 AK289702:-71 AF067167:-88 BC016708:-89 ENST00000379847.8:-92 ENST00000350021.2:-92 NM_002493.5:-92 NM_182739.3:-92 NM_001199987.2:-92 BC009801:-92 ENST00000366466.5:-117 | |||
|nearest_unigene=Hs.493668 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412 | |||
|species=human | |species=human | ||
|start= | |start=32573065 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 15:32, 13 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4185401,EH38E2690035) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 93 |
|---|---|
| Nearest PromoterID: | NM_182739 |
| Entrez ID: | 4712 |
| Nearest Unigene: | Hs.493668 |
| Nearest Refseq: | NM_002493 |
| Nearest Ensembl: | ENSG00000165264 |
| Gene Name: | |
| Gene Alias: | B17|CI |
| Gene Type: | protein-coding |
| CpG%: | 0.500000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |