TSS: Rfhg 114456.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NM_001393611.1:-17 NM_001353432.2:-17 ENST00000290943.10:126 KC955137:222 | ||
|annotation=promoter-TSS (NM_001353432) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4186232,EH38E2690630) | |ccre_description=pELS,CTCF-bound (EH38D4186232,EH38E2690630) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001353432) | ||
|distance=-17 | |distance=-17 | ||
|distance_to_tss= | |distance_to_tss=17 | ||
|end=33524268 | |end=33524268 | ||
|entrez_id= | |entrez_id=441459 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=bA255A11.3{{!}}bA255A11.5 | ||
|gene_description= | |gene_description=ankyrin repeat domain 18B | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000230453 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001353432 | ||
|nearest_unigene= | |nearest_refseq=NM_001013728 | ||
|nearest_transcripts=ENST00000290943.10:126 KC955137:222 | |||
|nearest_unigene=Hs.493710 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=33524268 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 15:34, 13 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4186232,EH38E2690630) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001353432 |
| Entrez ID: | 441459 |
| Nearest Unigene: | Hs.493710 |
| Nearest Refseq: | NM_001013728 |
| Nearest Ensembl: | ENSG00000230453 |
| Gene Name: | |
| Gene Alias: | bA255A11.3|bA255A11.5 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |