TSS: Rfhg 114601.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001281426) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4187187,EH38E2691327) | |ccre_description=PLS,CTCF-bound (EH38D4187187,EH38E2691327) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.067797 | |cpg_percent=0.067797 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001281426) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=0 | ||
|end=34620525 | |end=34620525 | ||
|entrez_id= | |entrez_id=11258 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.600000 | |gc_percent=0.600000 | ||
|gene_alias= | |gene_alias=DCTN-22{{!}}DCTN22 | ||
|gene_description= | |gene_description=dynactin subunit 3 | ||
|gene_id=11258 | |gene_id=11258 | ||
|gene_name= | |gene_name=DCTN3 | ||
|gene_source=HGNC:2713 | |gene_source=HGNC:2713 | ||
|gene_symbol=DCTN3 | |gene_symbol=DCTN3 | ||
|gene_synonyms=DCTN-22 | |gene_synonyms=DCTN-22 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:2713 | |hgnc_mgi_id=HGNC:2713 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}RAMPAGE{{!}}STRIPE-seq{{!}}C1CAGE{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}NETCAGE{{!}}ReCappable-seq{{!}}oligo_capping | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000137100 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001281427 | ||
|nearest_unigene= | |nearest_refseq=NM_007234 | ||
|nearest_unigene=Hs.511768 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}PRJNA401781{{!}}PRJNA597322{{!}}PRJDB5282{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start= | |start=34620466 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 19:05, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|PRJNA401781|PRJNA597322|PRJDB5282|PRJNA615891 |PRJNA4843412|DRA013844|PRJNA548673 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|RAMPAGE|STRIPE-seq|C1CAGE|SLIC_CAGE |TIF-seq2|NETCAGE|ReCappable-seq|oligo_capping | |||||||||||||||
| TSS cluster detected* | 13 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4187187,EH38E2691327) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001281427 |
| Entrez ID: | 11258 |
| Nearest Unigene: | Hs.511768 |
| Nearest Refseq: | NM_007234 |
| Nearest Ensembl: | ENSG00000137100 |
| Gene Name: | DCTN3 |
| Gene Alias: | DCTN-22|DCTN22 |
| Gene Description: | dynactin subunit 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.067797 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.