TSS: Rfhg 114673.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000354479.5:0 ENST00000421362.6:0 NM_001040411.3:0 NM_001040412.3:0 ENST00000534880.1:47 ENST00000537671.1:55 | ||
|annotation=promoter-TSS (NM_001040411) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001040411) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=0 | |distance_to_tss=0 | ||
|end=35041095 | |end=35041095 | ||
|entrez_id= | |entrez_id=138724 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=chromosome 9 open reading frame 131 | ||
|gene_id=138724 | |gene_id=138724 | ||
|gene_name=chromosome 9 open reading frame 131 | |gene_name=chromosome 9 open reading frame 131 | ||
| Line 19: | Line 20: | ||
|gene_symbol=C9orf131 | |gene_symbol=C9orf131 | ||
|gene_synonyms=MGC41945 | |gene_synonyms=MGC41945 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:31418 | |hgnc_mgi_id=HGNC:31418 | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000174038 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001040411 | ||
|nearest_unigene= | |nearest_refseq=NM_203299 | ||
|nearest_transcripts=ENST00000534880.1:47 ENST00000537671.1:55 | |||
|nearest_unigene=Hs.148250 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=35041095 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 15:39, 13 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001040411 |
| Entrez ID: | 138724 |
| Nearest Unigene: | Hs.148250 |
| Nearest Refseq: | NM_203299 |
| Nearest Ensembl: | ENSG00000174038 |
| Gene Name: | chromosome 9 open reading frame 131 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.