TSS: Rfhg 114701.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000378557.1) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D4187556,EH38E2691592) |chr=chr9 |cpg_percent=0.000000 |det...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001317991) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4187556,EH38E2691592) | |ccre_description=PLS,CTCF-bound (EH38D4187556,EH38E2691592) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001317991) | ||
|distance=17 | |distance=17 | ||
|distance_to_tss=- | |distance_to_tss=-158 | ||
|end=35111615 | |end=35111615 | ||
|entrez_id= | |entrez_id=80256 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.818182 | |gc_percent=0.818182 | ||
|gene_alias= | |gene_alias=KIAA1539 | ||
|gene_description= | |gene_description=family with sequence similarity 214 member B | ||
|gene_id=80256 | |gene_id=80256 | ||
|gene_name= | |gene_name=FAM214B | ||
|gene_source=HGNC:25666 | |gene_source=HGNC:25666 | ||
|gene_symbol=ATOSB | |gene_symbol=ATOSB | ||
|gene_synonyms=FLJ11560 bA182N22.6 | |gene_synonyms=FLJ11560 bA182N22.6 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25666 | |hgnc_mgi_id=HGNC:25666 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000005238 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001317991 | ||
|nearest_unigene= | |nearest_refseq=NM_025182 | ||
|nearest_unigene=Hs.301696 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=35111605 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 19:07, 6 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4187556,EH38E2691592) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -158 |
|---|---|
| Nearest PromoterID: | NM_001317991 |
| Entrez ID: | 80256 |
| Nearest Unigene: | Hs.301696 |
| Nearest Refseq: | NM_025182 |
| Nearest Ensembl: | ENSG00000005238 |
| Gene Name: | FAM214B |
| Gene Alias: | KIAA1539 |
| Gene Description: | family with sequence similarity 214 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.818182 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.