TSS: Rfhg 114710.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_134455) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.026316 | |cpg_percent=0.026316 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_134455) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-16 | |distance_to_tss=-16 | ||
|end=35115916 | |end=35115916 | ||
|entrez_id= | |entrez_id=80256 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.610390 | |gc_percent=0.610390 | ||
|gene_alias= | |gene_alias=KIAA1539 | ||
|gene_description= | |gene_description=family with sequence similarity 214 member B | ||
|gene_id=80256 | |gene_id=80256 | ||
|gene_name= | |gene_name=FAM214B | ||
|gene_source=HGNC:25666 | |gene_source=HGNC:25666 | ||
|gene_symbol=ATOSB | |gene_symbol=ATOSB | ||
|gene_synonyms=FLJ11560 bA182N22.6 | |gene_synonyms=FLJ11560 bA182N22.6 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25666 | |hgnc_mgi_id=HGNC:25666 | ||
|nearest_ensembl= | |methods=CAGE{{!}}NETCAGE{{!}}C1CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000005238 | ||
|nearest_refseq= | |nearest_promoter_id=NR_134455 | ||
|nearest_unigene= | |nearest_refseq=NM_025182 | ||
|nearest_unigene=Hs.301696 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start= | |start=35115840 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000378566.5 ENST00000322813.10 ENST00000605104.1 ENST00000605392.1 AK022837 BC004406 AK021622 AK307682 | |transcript_name=ENST00000378566.5 ENST00000322813.10 ENST00000605104.1 ENST00000605392.1 AK022837 BC004406 AK021622 AK307682 | ||
|tss_cluster_detected=4 | |||
|tss_id=rfhg_114710.1 | |tss_id=rfhg_114710.1 | ||
|tss_id_v3=hg_100578.1;hg_100579.1 | |tss_id_v3=hg_100578.1;hg_100579.1 | ||
Latest revision as of 19:07, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA4843412|DRA013844|PRJDB5282 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|NETCAGE|C1CAGE | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NR_134455 |
| Entrez ID: | 80256 |
| Nearest Unigene: | Hs.301696 |
| Nearest Refseq: | NM_025182 |
| Nearest Ensembl: | ENSG00000005238 |
| Gene Name: | FAM214B |
| Gene Alias: | KIAA1539 |
| Gene Description: | family with sequence similarity 214 member B |
| Gene Type: | protein-coding |
| CpG%: | 0.026316 |
| GC%: | 0.610390 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.