TSS: Rfhg 114786.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_032818) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4188028,EH38E2691938) | |ccre_description=PLS,CTCF-bound (EH38D4188028,EH38E2691938) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.083333 | |cpg_percent=0.083333 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_032818) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-4 | ||
|end=35665229 | |end=35665229 | ||
|entrez_id= | |entrez_id=84904 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.622951 | |gc_percent=0.622951 | ||
|gene_alias= | |gene_alias=C9orf100 | ||
|gene_description= | |gene_description=Rho guanine nucleotide exchange factor 39 | ||
|gene_id=84904 | |gene_id=84904 | ||
|gene_name= | |gene_name=ARHGEF39 | ||
|gene_source=HGNC:25909 | |gene_source=HGNC:25909 | ||
|gene_symbol=ARHGEF39 | |gene_symbol=ARHGEF39 | ||
|gene_synonyms=FLJ14642 | |gene_synonyms=FLJ14642 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25909 | |hgnc_mgi_id=HGNC:25909 | ||
|nearest_ensembl= | |methods=NETCAGE{{!}}CAGE{{!}}TIF-seq2{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}RAMPAGE{{!}}oligo_capping | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000137135 | ||
|nearest_refseq= | |nearest_promoter_id=NM_032818 | ||
|nearest_unigene= | |nearest_refseq=NM_032818 | ||
|nearest_unigene=Hs.534579 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA401781 | |||
|species=human | |species=human | ||
|start= | |start=35665169 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000475323.5 ENST00000378387.4 ENST00000490970.5 AK027548 AK225501 AK225529 BC033666 AK303513 | |transcript_name=ENST00000475323.5 ENST00000378387.4 ENST00000490970.5 AK027548 AK225501 AK225529 BC033666 AK303513 | ||
|tss_cluster_detected= | |tss_cluster_detected=9 | ||
|tss_id=rfhg_114786.1 | |tss_id=rfhg_114786.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B4E0T1 Q8N4T4 | |uniprot_id=B4E0T1 Q8N4T4 | ||
}} | }} |
Latest revision as of 19:09, 6 December 2023
Basic information about the TSS
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Source datasets | PRJNA4843412|DRA013844|PRJNA615891|PRJNA548673|PRJNA401781 | |||||||||||||
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Protocol | NETCAGE|CAGE|TIF-seq2|ReCappable-seq|SLIC_CAGE|RAMPAGE |oligo_capping | |||||||||||||
TSS cluster detected* | 9 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D4188028,EH38E2691938) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -4 |
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Nearest PromoterID: | NM_032818 |
Entrez ID: | 84904 |
Nearest Unigene: | Hs.534579 |
Nearest Refseq: | NM_032818 |
Nearest Ensembl: | ENSG00000137135 |
Gene Name: | ARHGEF39 |
Gene Alias: | C9orf100 |
Gene Description: | Rho guanine nucleotide exchange factor 39 |
Gene Type: | protein-coding |
CpG%: | 0.083333 |
GC%: | 0.622951 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.