TSS: Rfhg 11503.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000421812.2) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2218045,EH38E1381533) |chr=chr1 |cpg_percent=0.000000 |det...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=5' UTR (NM_001080470, exon 1 of 3) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2218045,EH38E1381533) | |ccre_description=PLS,CTCF-bound (EH38D2218045,EH38E1381533) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=5' UTR (NM_001080470, exon 1 of 3) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=567 | ||
|end=119647699 | |end=119647699 | ||
|entrez_id= | |entrez_id=90874 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=zinc finger protein 697 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=ZNF697 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000143067 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001080470 | ||
|nearest_unigene= | |nearest_refseq=NM_001080470 | ||
|nearest_unigene=Hs.381105 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=119647699 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 19:13, 6 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2218045,EH38E1381533) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 567 |
|---|---|
| Nearest PromoterID: | NM_001080470 |
| Entrez ID: | 90874 |
| Nearest Unigene: | Hs.381105 |
| Nearest Refseq: | NM_001080470 |
| Nearest Ensembl: | ENSG00000143067 |
| Gene Name: | ZNF697 |
| Gene Alias: | - |
| Gene Description: | zinc finger protein 697 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |