TSS: Rfhg 115153.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000377680.3) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D4190827,EH38E2694035) |chr=chr9 |cpg_percent=0.104651 |det...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_027294) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4190827,EH38E2694035) | |ccre_description=PLS,CTCF-bound (EH38D4190827,EH38E2694035) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.104651 | |cpg_percent=0.104651 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_027294) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=19 | ||
|end=38620620 | |end=38620620 | ||
|entrez_id= | |entrez_id=253650 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.643678 | |gc_percent=0.643678 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=ankyrin repeat domain 18A | ||
|gene_id=253650 | |gene_id=253650 | ||
|gene_name= | |gene_name=ANKRD18A | ||
|gene_source=HGNC:23643 | |gene_source=HGNC:23643 | ||
|gene_symbol=ANKRD18A | |gene_symbol=ANKRD18A | ||
|gene_synonyms=FLJ35740 KIAA2015 | |gene_synonyms=FLJ35740 KIAA2015 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23643 | |hgnc_mgi_id=HGNC:23643 | ||
|nearest_ensembl= | |methods=CAGE{{!}}ReCappable-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000180071 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001331100 | ||
|nearest_unigene= | |nearest_refseq=NM_147195 | ||
|nearest_unigene=Hs.644630 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA548673 | |||
|species=human | |species=human | ||
|start= | |start=38620534 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000399703.6 | |transcript_name=ENST00000399703.6 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_115153.1 | |tss_id=rfhg_115153.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=Q8IVF6 | |uniprot_id=Q8IVF6 | ||
}} | }} | ||
Latest revision as of 19:15, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJNA548673 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|ReCappable-seq | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4190827,EH38E2694035) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_001331100 |
| Entrez ID: | 253650 |
| Nearest Unigene: | Hs.644630 |
| Nearest Refseq: | NM_147195 |
| Nearest Ensembl: | ENSG00000180071 |
| Gene Name: | ANKRD18A |
| Gene Alias: | - |
| Gene Description: | ankyrin repeat domain 18A |
| Gene Type: | protein-coding |
| CpG%: | 0.104651 |
| GC%: | 0.643678 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.