TSS: Rfhg 115265.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000377311.3) |ccre_category=PLS |ccre_description=PLS (EH38D4192021,EH38E2694561) |chr=chr9 |cpg_percent=0.000000 |detailed_annot...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_153237) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D4192021,EH38E2694561) | |ccre_description=PLS (EH38D4192021,EH38E2694561) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_153237) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-15 | |distance_to_tss=-15 | ||
|end=68540884 | |end=68540884 | ||
|entrez_id= | |entrez_id=169693 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.400000 | |gc_percent=0.400000 | ||
|gene_alias= | |gene_alias=C9orf71 | ||
|gene_description= | |gene_description=transmembrane protein 252 | ||
|gene_id=169693 | |gene_id=169693 | ||
|gene_name= | |gene_name=TMEM252 | ||
|gene_source=HGNC:28537 | |gene_source=HGNC:28537 | ||
|gene_symbol=TMEM252 | |gene_symbol=TMEM252 | ||
|gene_synonyms=MGC34760 | |gene_synonyms=MGC34760 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:28537 | |hgnc_mgi_id=HGNC:28537 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000181778 | ||
|nearest_refseq= | |nearest_promoter_id=NM_153237 | ||
|nearest_unigene= | |nearest_refseq=NM_153237 | ||
|nearest_unigene=Hs.663056 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start= | |start=68540880 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 19:17, 6 December 2023
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D4192021,EH38E2694561) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -15 |
|---|---|
| Nearest PromoterID: | NM_153237 |
| Entrez ID: | 169693 |
| Nearest Unigene: | Hs.663056 |
| Nearest Refseq: | NM_153237 |
| Nearest Ensembl: | ENSG00000181778 |
| Gene Name: | TMEM252 |
| Gene Alias: | C9orf71 |
| Gene Description: | transmembrane protein 252 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.