TSS: Rfhg 115576.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000237937.7)
|all_trans=LF211276:-192 MA446853:-192 ENST00000376960.8:215 ENST00000376962.10:242 NM_001102420.3:242 NM_001102421.3:242 NM_006007.4:242 BC027707:253 BC011018:367 ENST00000487330.1:474 AF062346:479 LF345150:487 MA580727:487
|annotation=promoter-TSS (NM_001278244)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D4195240,EH38E2696747)
|ccre_description=PLS,CTCF-bound (EH38D4195240,EH38E2696747)
|chr=chr9
|chr=chr9
|cpg_percent=0.100000
|cpg_percent=0.100000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000237937.7)
|detailed_annotation=promoter-TSS (NM_001278244)
|distance=-192
|distance=-192
|distance_to_tss=-220
|distance_to_tss=-247
|end=72365460
|end=72365460
|entrez_id=ENSG00000107372
|entrez_id=7763
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.636364
|gc_percent=0.636364
|gene_alias=
|gene_alias=ZA20D2{{!}}ZFAND5A{{!}}ZNF216
|gene_description=
|gene_description=zinc finger AN1-type containing 5
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000376960.8
|nearest_ensembl=ENSG00000107372
|nearest_refseq=
|nearest_promoter_id=NM_001102420
|nearest_unigene=ENST00000487330
|nearest_refseq=NM_006007
|nearest_transcripts=ENST00000376960.8:215 ENST00000376962.10:242 NM_001102420.3:242 NM_001102421.3:242 NM_006007.4:242 BC027707:253 BC011018:367 ENST00000487330.1:474 AF062346:479 LF345150:487 MA580727:487
|nearest_unigene=Hs.406096
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=72365449
|start=72365450
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 15:55, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_115576.1
Species:human
Chr:chr9
Start:72365450
End:72365460
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4195240,EH38E2696747)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF211276:-192
MA446853:-192
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000376960.8:215
  • ENST00000376962.10:242
  • NM_001102420.3:242
  • NM_001102421.3:242
  • NM_006007.4:242
  • BC027707:253
  • BC011018:367
  • ENST00000487330.1:474
  • AF062346:479
  • LF345150:487
  • MA580727:487
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-247
Nearest PromoterID:NM_001102420
Entrez ID:7763
Nearest Unigene:Hs.406096
Nearest Refseq:NM_006007
Nearest Ensembl:ENSG00000107372
Gene Name:
Gene Alias:ZA20D2|ZFAND5A|ZNF216
Gene Type:protein-coding
CpG%:0.100000
GC%:0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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