TSS: Rfhg 115600.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans= | ||
|annotation=intron (NM_138691, intron 2 of 23) | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D4195457,EH38E2696922) | |ccre_description=dELS,CTCF-bound (EH38D4195457,EH38E2696922) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_138691, intron 2 of 23) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=65039 | ||
|end=72586854 | |end=72586854 | ||
|entrez_id= | |entrez_id=117531 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.310345 | |gc_percent=0.310345 | ||
|gene_alias= | |gene_alias=DFNA36{{!}}DFNB11{{!}}DFNB7 | ||
|gene_description= | |gene_description=transmembrane channel like 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000165091 | ||
|nearest_refseq= | |nearest_promoter_id=NM_138691 | ||
|nearest_unigene= | |nearest_refseq=NM_138691 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.670211 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=72586826 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= |
Latest revision as of 15:55, 13 March 2025
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | dELS,CTCF-bound (EH38D4195457,EH38E2696922) |
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Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | 65039 |
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Nearest PromoterID: | NM_138691 |
Entrez ID: | 117531 |
Nearest Unigene: | Hs.670211 |
Nearest Refseq: | NM_138691 |
Nearest Ensembl: | ENSG00000165091 |
Gene Name: | |
Gene Alias: | DFNA36|DFNB11|DFNB7 |
Gene Type: | protein-coding |
CpG%: | 0.000000 |
GC%: | 0.310345 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |