TSS: Hg 101580.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=-137762 |entrez_id=5727 |gc_percent=0.298507 |gene_alias=BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11 |gene_description=patched 1 |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
|HPE7= | |||
|NBCCS= | |||
|PTC= | |||
|PTC1= | |||
|PTCH= | |||
|PTCH11= | |||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance_to_tss=- | |distance=NA | ||
|distance_to_tss=-137670 | |||
|end=95654727 | |||
|end_of_center_position=95654727 | |||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.298507 | |gc_percent=0.298507 | ||
|gene_alias=BCNS | |gene_alias=BCNS{{!}}NBCCS{{!}}PTC{{!}}PTC1{{!}}PTCH | ||
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_name=PTCH1 | |gene_name=PTCH1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000185920 | |nearest_ensembl=ENSG00000185920 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001354919 | ||
|nearest_refseq=NM_000264 | |nearest_refseq=NM_000264 | ||
|nearest_unigene=Hs.494538 | |nearest_unigene=Hs.494538 | ||
|num_trans=0 | |||
|species=human | |||
|start=95654726 | |||
|start_of_center_position=95654726 | |||
|strand=- | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101580.1 | |tss_id=hg_101580.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:43, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -137670 |
|---|---|
| Nearest PromoterID: | NM_001354919 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | PTCH1 |
| Gene Alias: | BCNS|NBCCS|PTC|PTC1|PTCH |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.298507 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |