TSS: Rfhg 116454.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 7: | Line 8: | ||
|detailed_annotation=Intergenic | |detailed_annotation=Intergenic | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-1553 | ||
|end=89180406 | |end=89180406 | ||
|entrez_id= | |entrez_id=53358 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.471429 | |gc_percent=0.471429 | ||
|gene_alias= | |gene_alias=N-Shc{{!}}NSHC{{!}}RAI{{!}}SHCC | ||
|gene_description= | |gene_description=SHC adaptor protein 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE{{!}}ReCappable-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000148082 | ||
|nearest_refseq= | |nearest_promoter_id=NM_016848 | ||
|nearest_unigene= | |nearest_refseq=NM_016848 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.292737 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start= | |start=89180337 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name= | |transcript_name= | ||
|tss_cluster_detected=3 | |||
|tss_id=rfhg_116454.1 | |tss_id=rfhg_116454.1 | ||
|tss_id_v3=hg_101286.1 | |tss_id_v3=hg_101286.1 | ||
Latest revision as of 16:10, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA548673 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 3 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4208388,EH38E2705200) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1553 |
|---|---|
| Nearest PromoterID: | NM_016848 |
| Entrez ID: | 53358 |
| Nearest Unigene: | Hs.292737 |
| Nearest Refseq: | NM_016848 |
| Nearest Ensembl: | ENSG00000148082 |
| Gene Name: | |
| Gene Alias: | N-Shc|NSHC|RAI|SHCC |
| Gene Type: | protein-coding |
| CpG%: | 0.043478 |
| GC%: | 0.471429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |