TSS: Rfhg 116612.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001351433) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4210599,EH38E2706849) | |ccre_description=PLS,CTCF-bound (EH38D4210599,EH38E2706849) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.163934 | |cpg_percent=0.163934 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001351433) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=4 | ||
|end=91361951 | |end=91361951 | ||
|entrez_id= | |entrez_id=549 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.758065 | |gc_percent=0.758065 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=AU RNA binding methylglutaconyl-CoA hydratase | ||
|gene_id=549 | |gene_id=549 | ||
|gene_name= | |gene_name=AUH | ||
|gene_source=HGNC:890 | |gene_source=HGNC:890 | ||
|gene_symbol=AUH | |gene_symbol=AUH | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:890 | |hgnc_mgi_id=HGNC:890 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}ReCappable-seq{{!}}STRIPE-seq{{!}}NETCAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000148090 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001698 | ||
|nearest_unigene= | |nearest_refseq=NM_001698 | ||
|nearest_unigene=Hs.175905 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJNA615891{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA597322{{!}}PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start= | |start=91361890 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 19:40, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914|PRJNA615891|PRJNA401781|PRJNA548673 |PRJNA597322|PRJNA4843412|DRA013844 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|TIF-seq2|SLIC_CAGE|ReCappable-seq |STRIPE-seq|NETCAGE | |||||||||||||||
| TSS cluster detected* | 10 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4210599,EH38E2706849) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001698 |
| Entrez ID: | 549 |
| Nearest Unigene: | Hs.175905 |
| Nearest Refseq: | NM_001698 |
| Nearest Ensembl: | ENSG00000148090 |
| Gene Name: | AUH |
| Gene Alias: | - |
| Gene Description: | AU RNA binding methylglutaconyl-CoA hydratase |
| Gene Type: | protein-coding |
| CpG%: | 0.163934 |
| GC%: | 0.758065 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.