TSS: Rfhg 116744.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_031486) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4211957,EH38E2707851) | |ccre_description=PLS,CTCF-bound (EH38D4211957,EH38E2707851) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.045455 | |cpg_percent=0.045455 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_031486) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
|end=92878063 | |end=92878063 | ||
|entrez_id= | |entrez_id=83744 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.600000 | |gc_percent=0.600000 | ||
|gene_alias= | |gene_alias=BA526D8.4 | ||
|gene_description= | |gene_description=zinc finger protein 484 | ||
|gene_id=83744 | |gene_id=83744 | ||
|gene_name= | |gene_name=ZNF484 | ||
|gene_source=HGNC:23385 | |gene_source=HGNC:23385 | ||
|gene_symbol=ZNF484 | |gene_symbol=ZNF484 | ||
|gene_synonyms=BA526D8.4 FLJ33884 | |gene_synonyms=BA526D8.4 FLJ33884 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23385 | |hgnc_mgi_id=HGNC:23385 | ||
|nearest_ensembl= | |methods=RAMPAGE{{!}}NETCAGE{{!}}CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000127081 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001007101 | ||
|nearest_unigene= | |nearest_refseq=NM_031486 | ||
|nearest_unigene=Hs.668378 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start= | |start=92878019 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000375495.8 ENST00000395505.6 ENST00000395506.7 ENST00000332591.6 AK309617 AK292997 | |transcript_name=ENST00000375495.8 ENST00000395505.6 ENST00000395506.7 ENST00000332591.6 AK309617 AK292997 | ||
|tss_cluster_detected= | |tss_cluster_detected=7 | ||
|tss_id=rfhg_116744.1 | |tss_id=rfhg_116744.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A8KAD2 Q5JVG2 | |uniprot_id=A8KAD2 Q5JVG2 | ||
}} | }} | ||
Latest revision as of 19:42, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJNA401781|PRJNA4843412|DRA013844|PRJNA548673|PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | RAMPAGE|NETCAGE|CAGE|ReCappable-seq|SLIC_CAGE | |||||||||||||
| TSS cluster detected* | 7 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4211957,EH38E2707851) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_001007101 |
| Entrez ID: | 83744 |
| Nearest Unigene: | Hs.668378 |
| Nearest Refseq: | NM_031486 |
| Nearest Ensembl: | ENSG00000127081 |
| Gene Name: | ZNF484 |
| Gene Alias: | BA526D8.4 |
| Gene Description: | zinc finger protein 484 |
| Gene Type: | protein-coding |
| CpG%: | 0.045455 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.