TSS: Rfhg 117065.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001010895) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4214909,EH38E2710001) | |ccre_description=PLS,CTCF-bound (EH38D4214909,EH38E2710001) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.100000 | |cpg_percent=0.100000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001010895) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-192 | ||
|end=95875544 | |end=95875544 | ||
|entrez_id= | |entrez_id=375748 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.626374 | |gc_percent=0.626374 | ||
|gene_alias= | |gene_alias=BMFS2{{!}}C9orf102{{!}}RAD26L{{!}}SR278 | ||
|gene_description= | |gene_description=ERCC excision repair 6 like 2 | ||
|gene_id=100128782 | |gene_id=100128782 | ||
|gene_name=ERCC6L2 | |gene_name=ERCC6L2 | ||
|gene_source=HGNC:27858 | |gene_source=HGNC:27858 | ||
|gene_symbol=ERCC6L2-AS1 | |gene_symbol=ERCC6L2-AS1 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:27858 | |hgnc_mgi_id=HGNC:27858 | ||
|nearest_ensembl= | |methods=CAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}SLIC_CAGE{{!}}TIF-seq2 | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000182150 | ||
|nearest_refseq= | |nearest_promoter_id=NM_020207 | ||
|nearest_unigene= | |nearest_refseq=NM_020207 | ||
|nearest_unigene=Hs.432364 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA401781{{!}}PRJNA548673{{!}}DRA013844{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start= | |start=95875454 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000433656.2 ENST00000671508.1 AF170307 | |transcript_name=ENST00000433656.2 ENST00000671508.1 AF170307 | ||
|tss_cluster_detected=8 | |||
|tss_id=rfhg_117065.1 | |tss_id=rfhg_117065.1 | ||
|tss_id_v3=hg_101582.1;hg_101583.1;hg_101584.1 | |tss_id_v3=hg_101582.1;hg_101583.1;hg_101584.1 | ||
Latest revision as of 19:49, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA401781|PRJNA548673|DRA013844|PRJNA615891 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|oligo_capping|ReCappable-seq|SLIC_CAGE|TIF-seq2 | |||||||||||||||
| TSS cluster detected* | 8 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4214909,EH38E2710001) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -192 |
|---|---|
| Nearest PromoterID: | NM_020207 |
| Entrez ID: | 375748 |
| Nearest Unigene: | Hs.432364 |
| Nearest Refseq: | NM_020207 |
| Nearest Ensembl: | ENSG00000182150 |
| Gene Name: | ERCC6L2 |
| Gene Alias: | BMFS2|C9orf102|RAD26L|SR278 |
| Gene Description: | ERCC excision repair 6 like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.100000 |
| GC%: | 0.626374 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.