TSS: Rfhg 117140.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_001333) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4215794,EH38E2710648) | |ccre_description=PLS,CTCF-bound (EH38D4215794,EH38E2710648) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001333) | ||
|distance=15 | |distance=15 | ||
|distance_to_tss=-15 | |distance_to_tss=-15 | ||
|end=97039658 | |end=97039658 | ||
|entrez_id= | |entrez_id=1515 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=CATL2{{!}}CTSL2{{!}}CTSU | ||
|gene_description= | |gene_description=cathepsin V | ||
|gene_id=1515 | |gene_id=1515 | ||
|gene_name= | |gene_name=CTSV | ||
|gene_source=HGNC:2538 | |gene_source=HGNC:2538 | ||
|gene_symbol=CTSV | |gene_symbol=CTSV | ||
|gene_synonyms=CTSU | |gene_synonyms=CTSU | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:2538 | |hgnc_mgi_id=HGNC:2538 | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000136943 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001201575 | ||
|nearest_unigene= | |nearest_refseq=NM_001333 | ||
|nearest_unigene=Hs.610096 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=97039658 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 19:50, 6 December 2023
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4215794,EH38E2710648) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -15 |
|---|---|
| Nearest PromoterID: | NM_001201575 |
| Entrez ID: | 1515 |
| Nearest Unigene: | Hs.610096 |
| Nearest Refseq: | NM_001333 |
| Nearest Ensembl: | ENSG00000136943 |
| Gene Name: | CTSV |
| Gene Alias: | CATL2|CTSL2|CTSU |
| Gene Description: | cathepsin V |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.