TSS: Rfhg 119118.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_135129) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4237827,EH38E2725667) | |ccre_description=PLS,CTCF-bound (EH38D4237827,EH38E2725667) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.142857 | |cpg_percent=0.142857 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_135129) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=18 | |distance_to_tss=18 | ||
|end=124009396 | |end=124009396 | ||
|entrez_id= | |entrez_id=100505588 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.555556 | |gc_percent=0.555556 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC100505588 | ||
|gene_id=100505588 | |gene_id=100505588 | ||
|gene_name= | |gene_name=LOC100505588 | ||
|gene_source=EntrezGene:100505588 | |gene_source=EntrezGene:100505588 | ||
|gene_symbol=LHX2-AS1 | |gene_symbol=LHX2-AS1 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000236668 | ||
|nearest_refseq= | |nearest_promoter_id=NR_135129 | ||
|nearest_unigene= | |nearest_refseq=NR_135129 | ||
|nearest_unigene=Hs.547168 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=124009361 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 20:27, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4237827,EH38E2725667) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NR_135129 |
| Entrez ID: | 100505588 |
| Nearest Unigene: | Hs.547168 |
| Nearest Refseq: | NR_135129 |
| Nearest Ensembl: | ENSG00000236668 |
| Gene Name: | LOC100505588 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100505588 |
| Gene Type: | ncRNA |
| CpG%: | 0.142857 |
| GC%: | 0.555556 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.