TSS: Rfhg 119298.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=intron (ENST00000420643.5, intron 1 of 7)
|all_trans=
|annotation=intron (NM_001006619, intron 4 of 10)
|ccre_category=dELS
|ccre_category=dELS
|ccre_description=dELS,CTCF-bound (EH38D4239480,EH38E2726959)
|ccre_description=dELS,CTCF-bound (EH38D4239480,EH38E2726959)
|chr=chr9
|chr=chr9
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-intron (ENST00000265960.7, intron 4 of 11)
|detailed_annotation=L3b{{!}}LINE{{!}}CR1
|distance=
|distance=
|distance_to_tss=17699
|distance_to_tss=74490
|end=125632728
|end=125632728
|entrez_id=ENSG00000119487
|entrez_id=79109
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.500000
|gc_percent=0.500000
|gene_alias=
|gene_alias=JC310{{!}}MIP1{{!}}SIN1{{!}}SIN1b{{!}}SIN1g
|gene_description=
|gene_description=MAPK associated protein 1
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000420643.5
|nearest_ensembl=ENSG00000119487
|nearest_refseq=
|nearest_promoter_id=NM_001006617
|nearest_unigene=ENST00000437973
|nearest_refseq=NM_024117
|nearest_transcripts=
|nearest_unigene=Hs.495138
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=125632708
|start=125632709
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 17:04, 13 March 2025

Basic information about the TSS


TSS ID:rfhg_119298.1
Species:human
Chr:chr9
Start:125632709
End:125632728
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS,CTCF-bound (EH38D4239480,EH38E2726959)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:74490
    Nearest PromoterID:NM_001006617
    Entrez ID:79109
    Nearest Unigene:Hs.495138
    Nearest Refseq:NM_024117
    Nearest Ensembl:ENSG00000119487
    Gene Name:
    Gene Alias:JC310|MIP1|SIN1|SIN1b|SIN1g
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.500000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):