TSS: Rfhg 119648.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_203305) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4242145,EH38E2729038) | |ccre_description=PLS,CTCF-bound (EH38D4242145,EH38E2729038) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_203305) | ||
|distance=12 | |distance=12 | ||
|distance_to_tss=- | |distance_to_tss=-30 | ||
|end=127950755 | |end=127950755 | ||
|entrez_id= | |entrez_id=399665 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=C9orf132{{!}}EEIG1{{!}}SYM-3A{{!}}bA203J24.7 | ||
|gene_description= | |gene_description=family with sequence similarity 102 member A | ||
|gene_id=399665 | |gene_id=399665 | ||
|gene_name= | |gene_name=FAM102A | ||
|gene_source=HGNC:31419 | |gene_source=HGNC:31419 | ||
|gene_symbol=EEIG1 | |gene_symbol=EEIG1 | ||
|gene_synonyms=Eeig1 SYM-3A bA203J24.7 | |gene_synonyms=Eeig1 SYM-3A bA203J24.7 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:31419 | |hgnc_mgi_id=HGNC:31419 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000167106 | ||
|nearest_refseq= | |nearest_promoter_id=NM_203305 | ||
|nearest_unigene= | |nearest_refseq=NM_203305 | ||
|nearest_unigene=Hs.535972 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=127950734 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= |
Latest revision as of 20:37, 6 December 2023
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | PLS,CTCF-bound (EH38D4242145,EH38E2729038) |
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Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -30 |
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Nearest PromoterID: | NM_203305 |
Entrez ID: | 399665 |
Nearest Unigene: | Hs.535972 |
Nearest Refseq: | NM_203305 |
Nearest Ensembl: | ENSG00000167106 |
Gene Name: | FAM102A |
Gene Alias: | C9orf132|EEIG1|SYM-3A|bA203J24.7 |
Gene Description: | family with sequence similarity 102 member A |
Gene Type: | protein-coding |
CpG%: | 0.000000 |
GC%: | 0.500000 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.