TSS: Rfhg 119668.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000373078.5:0 NM_197956.4:0 AK122729:0 DQ600055:62 BC021580:144 AL833392:198 KJ905037:208 | ||
|annotation=promoter-TSS (NM_197956) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4242315,EH38E2729191) | |ccre_description=PLS,CTCF-bound (EH38D4242315,EH38E2729191) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.085106 | |cpg_percent=0.085106 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_197956) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-13 | ||
|end=128067357 | |end=128067357 | ||
|entrez_id= | |entrez_id=203245 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.604167 | |gc_percent=0.604167 | ||
|gene_alias= | |gene_alias=C9orf90{{!}}bA379C10.2 | ||
|gene_description= | |gene_description=nuclear apoptosis inducing factor 1 | ||
|gene_id=203245 | |gene_id=203245 | ||
|gene_name=nuclear apoptosis inducing factor 1 | |gene_name=nuclear apoptosis inducing factor 1 | ||
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|gene_symbol=NAIF1 | |gene_symbol=NAIF1 | ||
|gene_synonyms=DKFZp762G199 bA379C10.2 | |gene_synonyms=DKFZp762G199 bA379C10.2 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25446 | |hgnc_mgi_id=HGNC:25446 | ||
|nearest_ensembl= | |methods=NETCAGE{{!}}CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000171169 | ||
|nearest_refseq= | |nearest_promoter_id=NM_197956 | ||
|nearest_unigene= | |nearest_refseq=NM_197956 | ||
|nearest_transcripts=DQ600055:62 BC021580:144 AL833392:198 KJ905037:208 | |||
|nearest_unigene=Hs.373606 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start= | |start=128067310 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000373078.5 AK122729 | |transcript_name=ENST00000373078.5 AK122729 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_119668.1 | |tss_id=rfhg_119668.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A024R887 | |uniprot_id=A0A024R887 | ||
}} | }} | ||
Latest revision as of 17:10, 13 March 2025
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4242315,EH38E2729191) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -13 |
|---|---|
| Nearest PromoterID: | NM_197956 |
| Entrez ID: | 203245 |
| Nearest Unigene: | Hs.373606 |
| Nearest Refseq: | NM_197956 |
| Nearest Ensembl: | ENSG00000171169 |
| Gene Name: | nuclear apoptosis inducing factor 1 |
| Gene Alias: | C9orf90|bA379C10.2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085106 |
| GC%: | 0.604167 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.