TSS: Rfhg 119810.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000420512.5) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D4242803,EH38E2729586) |chr=chr9 |cpg_percent=0.052632 |d...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NM_001286760.1:-37 ENST00000447915.5:-83 AK314294:-83 ENST00000420512.5:391 | ||
|annotation=promoter-TSS (NM_001286760) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4242803,EH38E2729586) | |ccre_description=pELS,CTCF-bound (EH38D4242803,EH38E2729586) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.052632 | |cpg_percent=0.052632 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001286760) | ||
|distance=-37 | |distance=-37 | ||
|distance_to_tss= | |distance_to_tss=46 | ||
|end=128419216 | |end=128419216 | ||
|entrez_id= | |entrez_id=51148 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.700000 | |gc_percent=0.700000 | ||
|gene_alias= | |gene_alias=CEECAM1{{!}}GLT25D3 | ||
|gene_description= | |gene_description=cerebral endothelial cell adhesion molecule | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000167123 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001286760 | ||
|nearest_unigene= | |nearest_refseq=NM_016174 | ||
|nearest_transcripts=ENST00000447915.5:-83 AK314294:-83 ENST00000420512.5:391 | |||
|nearest_unigene=Hs.495230 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=128419197 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 17:13, 13 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4242803,EH38E2729586) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NM_001286760 |
| Entrez ID: | 51148 |
| Nearest Unigene: | Hs.495230 |
| Nearest Refseq: | NM_016174 |
| Nearest Ensembl: | ENSG00000167123 |
| Gene Name: | |
| Gene Alias: | CEECAM1|GLT25D3 |
| Gene Type: | protein-coding |
| CpG%: | 0.052632 |
| GC%: | 0.700000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |