TSS: Rfhg 119912.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_016390) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4243170,EH38E2729880) | |ccre_description=PLS,CTCF-bound (EH38D4243170,EH38E2729880) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.097561 | |cpg_percent=0.097561 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_016390) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-6 | ||
|end=128829821 | |end=128829821 | ||
|entrez_id= | |entrez_id=51490 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.619048 | |gc_percent=0.619048 | ||
|gene_alias= | |gene_alias=C9orf114{{!}}CENP-32{{!}}CENP32{{!}}HSPC109 | ||
|gene_description= | |gene_description=SPOUT domain containing methyltransferase 1 | ||
|gene_id=51490 | |gene_id=51490 | ||
|gene_name= | |gene_name=SPOUT1 | ||
|gene_source=HGNC:26933 | |gene_source=HGNC:26933 | ||
|gene_symbol=SPOUT1 | |gene_symbol=SPOUT1 | ||
|gene_synonyms=CENP-32 HSPC109 | |gene_synonyms=CENP-32 HSPC109 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:26933 | |hgnc_mgi_id=HGNC:26933 | ||
|nearest_ensembl= | |methods=CAGE{{!}}SLIC_CAGE{{!}}TIF-seq2{{!}}NETCAGE{{!}}RAMPAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}STRIPE-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000198917 | ||
|nearest_refseq= | |nearest_promoter_id=NM_016390 | ||
|nearest_unigene= | |nearest_refseq=NM_016390 | ||
|nearest_unigene=Hs.224137 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA401781{{!}}PRJNA615891{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA548673{{!}}PRJNA597322 | |||
|species=human | |species=human | ||
|start= | |start=128829780 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000361256.10 AL110193 AK303563 BC010579 BC046133 BC063644 BC021273 BC056890 BC033677 BC039590 AF161459 HQ448052 CU687792 | |transcript_name=ENST00000361256.10 AL110193 AK303563 BC010579 BC046133 BC063644 BC021273 BC056890 BC033677 BC039590 AF161459 HQ448052 CU687792 | ||
|tss_cluster_detected= | |tss_cluster_detected=10 | ||
|tss_id=rfhg_119912.1 | |tss_id=rfhg_119912.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=B4E0X4 Q5T280 Q9P041 | |uniprot_id=B4E0X4 Q5T280 Q9P041 | ||
}} | }} | ||
Latest revision as of 20:42, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJNA401781|PRJNA615891|PRJNA4843412|DRA013844|PRJNA548673 |PRJNA597322 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|SLIC_CAGE|TIF-seq2|NETCAGE|RAMPAGE|oligo_capping |ReCappable-seq|STRIPE-seq | |||||||||||||
| TSS cluster detected* | 10 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4243170,EH38E2729880) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NM_016390 |
| Entrez ID: | 51490 |
| Nearest Unigene: | Hs.224137 |
| Nearest Refseq: | NM_016390 |
| Nearest Ensembl: | ENSG00000198917 |
| Gene Name: | SPOUT1 |
| Gene Alias: | C9orf114|CENP-32|CENP32|HSPC109 |
| Gene Description: | SPOUT domain containing methyltransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.097561 |
| GC%: | 0.619048 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.