TSS: Rfhg 119995.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_203434) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4243560,EH38E2730196) | |ccre_description=PLS,CTCF-bound (EH38D4243560,EH38E2730196) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.093750 | |cpg_percent=0.093750 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_203434) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=10 | ||
|end=129178267 | |end=129178267 | ||
|entrez_id= | |entrez_id=389792 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.636364 | |gc_percent=0.636364 | ||
|gene_alias= | |gene_alias=bA247A12.2 | ||
|gene_description= | |gene_description=immediate early response 5 like | ||
|gene_id=389792 | |gene_id=389792 | ||
|gene_name= | |gene_name=IER5L | ||
|gene_source=HGNC:23679 | |gene_source=HGNC:23679 | ||
|gene_symbol=IER5L | |gene_symbol=IER5L | ||
|gene_synonyms=bA247A12.2 | |gene_synonyms=bA247A12.2 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23679 | |hgnc_mgi_id=HGNC:23679 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}C1CAGE{{!}}TIF-seq2{{!}}SLIC_CAGE{{!}}NETCAGE{{!}}ReCappable-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000188483 | ||
|nearest_refseq= | |nearest_promoter_id=NM_203434 | ||
|nearest_unigene= | |nearest_refseq=NM_203434 | ||
|nearest_unigene=Hs.529857 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}ENCODE{{!}}PRJDB5282{{!}}DRA013844{{!}}PRJNA615891{{!}}PRJNA548673{{!}}PRJNA4843412{{!}}PRJNA401781 | |||
|species=human | |species=human | ||
|start= | |start=129178235 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000372491.4 BC064028 | |transcript_name=ENST00000372491.4 BC064028 | ||
|tss_cluster_detected=11 | |||
|tss_id=rfhg_119995.1 | |tss_id=rfhg_119995.1 | ||
|tss_id_v3=hg_102737.1 | |tss_id_v3=hg_102737.1 | ||
Latest revision as of 20:44, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|ENCODE|PRJDB5282|DRA013844|PRJNA615891 |PRJNA548673|PRJNA4843412|PRJNA401781 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|C1CAGE|TIF-seq2|SLIC_CAGE|NETCAGE |ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 11 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4243560,EH38E2730196) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_203434 |
| Entrez ID: | 389792 |
| Nearest Unigene: | Hs.529857 |
| Nearest Refseq: | NM_203434 |
| Nearest Ensembl: | ENSG00000188483 |
| Gene Name: | IER5L |
| Gene Alias: | bA247A12.2 |
| Gene Description: | immediate early response 5 like |
| Gene Type: | protein-coding |
| CpG%: | 0.093750 |
| GC%: | 0.636364 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.