TSS: Rfhg 120058.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NM_001202403, intron 1 of 4) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D4244233,EH38E2730725) | |ccre_description=pELS,CTCF-bound (EH38D4244233,EH38E2730725) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_001202403, intron 1 of 4) | ||
|distance=19 | |distance=19 | ||
|distance_to_tss= | |distance_to_tss=606 | ||
|end=129641545 | |end=129641545 | ||
|entrez_id= | |entrez_id=140459 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=ankyrin repeat and SOCS box containing 6 | ||
|gene_id=140459 | |gene_id=140459 | ||
|gene_name= | |gene_name=ASB6 | ||
|gene_source=HGNC:17181 | |gene_source=HGNC:17181 | ||
|gene_symbol=ASB6 | |gene_symbol=ASB6 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17181 | |hgnc_mgi_id=HGNC:17181 | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000148331 | ||
|nearest_refseq= | |nearest_promoter_id=NM_177999 | ||
|nearest_unigene= | |nearest_refseq=NM_017873 | ||
|nearest_unigene=Hs.125037 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=129641545 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 20:45, 6 December 2023
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4244233,EH38E2730725) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 606 |
|---|---|
| Nearest PromoterID: | NM_177999 |
| Entrez ID: | 140459 |
| Nearest Unigene: | Hs.125037 |
| Nearest Refseq: | NM_017873 |
| Nearest Ensembl: | ENSG00000148331 |
| Gene Name: | ASB6 |
| Gene Alias: | - |
| Gene Description: | ankyrin repeat and SOCS box containing 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.