TSS: Rfhg 120059.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NM_017873) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.120000 | |cpg_percent=0.120000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_017873) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=18 | ||
|end=129642171 | |end=129642171 | ||
|entrez_id= | |entrez_id=140459 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.776316 | |gc_percent=0.776316 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=ankyrin repeat and SOCS box containing 6 | ||
|gene_id=140459 | |gene_id=140459 | ||
|gene_name= | |gene_name=ASB6 | ||
|gene_source=HGNC:17181 | |gene_source=HGNC:17181 | ||
|gene_symbol=ASB6 | |gene_symbol=ASB6 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17181 | |hgnc_mgi_id=HGNC:17181 | ||
|nearest_ensembl= | |methods=NETCAGE{{!}}CAGE{{!}}SLIC_CAGE{{!}}ReCappable-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000148331 | ||
|nearest_refseq= | |nearest_promoter_id=NM_177999 | ||
|nearest_unigene= | |nearest_refseq=NM_017873 | ||
|nearest_unigene=Hs.125037 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA548673{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start= | |start=129642096 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000450050.6 ENST00000277458.5 ENST00000277459.8 BC001719 AK225618 AK000555 AK023004 AK292807 AK299193 | |transcript_name=ENST00000450050.6 ENST00000277458.5 ENST00000277459.8 BC001719 AK225618 AK000555 AK023004 AK292807 AK299193 | ||
|tss_cluster_detected= | |tss_cluster_detected=6 | ||
|tss_id=rfhg_120059.1 | |tss_id=rfhg_120059.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A8K9U2 B4DRC4 F6TX30 Q9NWX5 | |uniprot_id=A8K9U2 B4DRC4 F6TX30 Q9NWX5 | ||
}} | }} | ||
Latest revision as of 20:45, 6 December 2023
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844|PRJNA401781|PRJNA548673|PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE|SLIC_CAGE|ReCappable-seq | |||||||||||||
| TSS cluster detected* | 6 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_177999 |
| Entrez ID: | 140459 |
| Nearest Unigene: | Hs.125037 |
| Nearest Refseq: | NM_017873 |
| Nearest Ensembl: | ENSG00000148331 |
| Gene Name: | ASB6 |
| Gene Alias: | - |
| Gene Description: | ankyrin repeat and SOCS box containing 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.120000 |
| GC%: | 0.776316 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.