TSS: Rfhg 120862.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000412181.1) |ccre_category=N |ccre_description=N |chr=chr9 |cpg_percent=0.000000 |detailed_annotation=antisense-promoter-TSS (EN...") |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_135126) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_135126) | ||
|distance=37 | |distance=37 | ||
|distance_to_tss=-44 | |distance_to_tss=-44 | ||
|end=134054253 | |end=134054253 | ||
|entrez_id= | |entrez_id=100130548 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.714286 | |gc_percent=0.714286 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC100130548 | ||
|gene_id=100130548 | |gene_id=100130548 | ||
|gene_name= | |gene_name=LOC100130548 | ||
|gene_source=EntrezGene:100130548 | |gene_source=EntrezGene:100130548 | ||
|gene_symbol=LOC100130548 | |gene_symbol=LOC100130548 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000235138 | ||
|nearest_refseq= | |nearest_promoter_id=NR_135126 | ||
|nearest_unigene= | |nearest_refseq=NR_135126 | ||
|nearest_unigene=Hs.671096 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=134054240 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= |
Latest revision as of 20:59, 6 December 2023
Basic information about the TSS
|
| |||||||||||||
Source datasets | FANTOM5 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | - |
---|---|
Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | -44 |
---|---|
Nearest PromoterID: | NR_135126 |
Entrez ID: | 100130548 |
Nearest Unigene: | Hs.671096 |
Nearest Refseq: | NR_135126 |
Nearest Ensembl: | ENSG00000235138 |
Gene Name: | LOC100130548 |
Gene Alias: | - |
Gene Description: | uncharacterized LOC100130548 |
Gene Type: | ncRNA |
CpG%: | 0.000000 |
GC%: | 0.714286 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.