TSS: Rfhg 120877.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_023344) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4249426,EH38E2734690) | |ccre_description=PLS,CTCF-bound (EH38D4249426,EH38E2734690) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.333333 | |cpg_percent=0.333333 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_023344) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
|end=134164570 | |end=134164570 | ||
|entrez_id= | |entrez_id=100151684 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.857143 | |gc_percent=0.857143 | ||
|gene_alias= | |gene_alias=RNU6ATAC1{{!}}U6ATAC | ||
|gene_description= | |gene_description=RNA, U6atac small nuclear (U12-dependent splicing) | ||
|gene_id=100151684 | |gene_id=100151684 | ||
|gene_name= | |gene_name=RNU6ATAC | ||
|gene_source=HGNC:34017 | |gene_source=HGNC:34017 | ||
|gene_symbol=RNU6ATAC | |gene_symbol=RNU6ATAC | ||
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|gene_type=snRNA | |gene_type=snRNA | ||
|hgnc_mgi_id=HGNC:34017 | |hgnc_mgi_id=HGNC:34017 | ||
|nearest_ensembl= | |methods=CAGE{{!}}ReCappable-seq{{!}}SLIC_CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000221676 | ||
|nearest_refseq= | |nearest_promoter_id=NR_023344 | ||
|nearest_unigene= | |nearest_refseq=NR_023344 | ||
|nearest_unigene=Hs.545589 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA548673{{!}}PRJNA615891 | |||
|species=human | |species=human | ||
|start= | |start=134164564 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000408749.1 U62823 | |transcript_name=ENST00000408749.1 U62823 | ||
|tss_cluster_detected=4 | |||
|tss_id=rfhg_120877.1 | |tss_id=rfhg_120877.1 | ||
|tss_id_v3=hg_103053.1 | |tss_id_v3=hg_103053.1 | ||
Latest revision as of 20:59, 6 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA548673|PRJNA615891 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|ReCappable-seq|SLIC_CAGE | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4249426,EH38E2734690) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NR_023344 |
| Entrez ID: | 100151684 |
| Nearest Unigene: | Hs.545589 |
| Nearest Refseq: | NR_023344 |
| Nearest Ensembl: | ENSG00000221676 |
| Gene Name: | RNU6ATAC |
| Gene Alias: | RNU6ATAC1|U6ATAC |
| Gene Description: | RNA, U6atac small nuclear (U12-dependent splicing) |
| Gene Type: | snRNA |
| CpG%: | 0.333333 |
| GC%: | 0.857143 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.