TSS: Rfhg 121613.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000391553.2:10 ENST00000392827.2:-248 AL136540:327 AF416715:329 BC016958:349 AM393547:363 | ||
|annotation=promoter-TSS (NM_031297) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4253415,EH38E2737700) | |ccre_description=PLS,CTCF-bound (EH38D4253415,EH38E2737700) | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_031297) | ||
|distance=10 | |distance=10 | ||
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
|end=137221333 | |end=137221333 | ||
|entrez_id= | |entrez_id=727800 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=ring finger protein 208 | ||
|gene_id=727800 | |gene_id=727800 | ||
|gene_name=ring finger protein 208 | |gene_name=ring finger protein 208 | ||
| Line 19: | Line 20: | ||
|gene_symbol=RNF208 | |gene_symbol=RNF208 | ||
|gene_synonyms=DKFZP761H1710 | |gene_synonyms=DKFZP761H1710 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25420 | |hgnc_mgi_id=HGNC:25420 | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000212864 | ||
|nearest_refseq= | |nearest_promoter_id=NM_031297 | ||
|nearest_unigene= | |nearest_refseq=NM_031297 | ||
|nearest_transcripts=ENST00000392827.2:-248 AL136540:327 AF416715:329 BC016958:349 AM393547:363 | |||
|nearest_unigene=Hs.512767 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=137221333 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 17:47, 13 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4253415,EH38E2737700) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_031297 |
| Entrez ID: | 727800 |
| Nearest Unigene: | Hs.512767 |
| Nearest Refseq: | NM_031297 |
| Nearest Ensembl: | ENSG00000212864 |
| Gene Name: | ring finger protein 208 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.