TSS: Rfhg 121632.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans=BC172399:307 ENST00000673953.1:-442 ENST00000361134.2:-442 NM_080877.3:-442 AK095999:-442 AB055000:-450 ENST00000673835.1:-474 NM_001177316.2:-474 | ||
|annotation=intron (NM_080877, intron 1 of 12) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.052632 | |cpg_percent=0.052632 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_080877, intron 1 of 12) | ||
|distance=307 | |distance=307 | ||
|distance_to_tss=451 | |distance_to_tss=451 | ||
|end=137231394 | |end=137231394 | ||
|entrez_id= | |entrez_id=142680 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.650000 | |gc_percent=0.650000 | ||
|gene_alias= | |gene_alias=HHRH{{!}}NPTIIc | ||
|gene_description= | |gene_description=solute carrier family 34 member 3 | ||
|gene_id=142680 | |gene_id=142680 | ||
|gene_name=solute carrier family 34 member 3 | |gene_name=solute carrier family 34 member 3 | ||
| Line 19: | Line 20: | ||
|gene_symbol=SLC34A3 | |gene_symbol=SLC34A3 | ||
|gene_synonyms=FLJ38680 NPTIIc | |gene_synonyms=FLJ38680 NPTIIc | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:20305 | |hgnc_mgi_id=HGNC:20305 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000198569 | ||
|nearest_refseq= | |nearest_promoter_id=NM_080877 | ||
|nearest_unigene= | |nearest_refseq=NM_080877 | ||
|nearest_transcripts=ENST00000673953.1:-442 ENST00000361134.2:-442 NM_080877.3:-442 AK095999:-442 AB055000:-450 ENST00000673835.1:-474 NM_001177316.2:-474 | |||
|nearest_unigene=Hs.432442 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=137231375 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 17:47, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 451 |
|---|---|
| Nearest PromoterID: | NM_080877 |
| Entrez ID: | 142680 |
| Nearest Unigene: | Hs.432442 |
| Nearest Refseq: | NM_080877 |
| Nearest Ensembl: | ENSG00000198569 |
| Gene Name: | solute carrier family 34 member 3 |
| Gene Alias: | HHRH|NPTIIc |
| Gene Type: | protein-coding |
| CpG%: | 0.052632 |
| GC%: | 0.650000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.