TSS: Rfhg 121850.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NR_134301.1:0 MP014955:81 AK303669:235 ENST00000381344.8:236 NM_004508.4:236 ENST00000491735.1:252 ENST00000482091.1:420 AK311110:440 NM_001317956.2:469 NM_001317957.2:469 BC107893:469 AK222875:469 X17025:470 ENST00000429642.2:472 | ||
|annotation=promoter-TSS (NM_004508) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2304992,EH38E1441656) | |ccre_description=PLS,CTCF-bound (EH38D2304992,EH38E1441656) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.103448 | |cpg_percent=0.103448 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_004508) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-3 | ||
|end=1049384 | |end=1049384 | ||
|entrez_id= | |entrez_id=3422 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.700000 | |gc_percent=0.700000 | ||
|gene_alias= | |gene_alias=IPP1{{!}}IPPI1 | ||
|gene_description= | |gene_description=isopentenyl-diphosphate delta isomerase 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=SLIC_CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000067064 | ||
|nearest_refseq= | |nearest_promoter_id=NR_134301 | ||
|nearest_unigene= | |nearest_refseq=NM_004508 | ||
|nearest_transcripts=MP014955:81 AK303669:235 ENST00000381344.8:236 NM_004508.4:236 ENST00000491735.1:252 ENST00000482091.1:420 AK311110:440 NM_001317956.2:469 NM_001317957.2:469 BC107893:469 AK222875:469 X17025:470 ENST00000429642.2:472 | |||
|nearest_unigene=Hs.283652 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA615891 | |||
|species=human | |species=human | ||
|start= | |start=1049355 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 17:51, 13 March 2025
Basic information about the TSS
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| Source datasets | PRJNA615891 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | SLIC_CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2304992,EH38E1441656) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NR_134301 |
| Entrez ID: | 3422 |
| Nearest Unigene: | Hs.283652 |
| Nearest Refseq: | NM_004508 |
| Nearest Ensembl: | ENSG00000067064 |
| Gene Name: | |
| Gene Alias: | IPP1|IPPI1 |
| Gene Type: | protein-coding |
| CpG%: | 0.103448 |
| GC%: | 0.700000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |