TSS: Rfhg 123321.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans=LF346173:-44 MA581750:-44 BC078172:-86 ENST00000605833.1:-87 NR_108061.1:-87 LF346171:176 MA581748:176 LF346168:377 MA581745:377 ENST00000661048.1:448 | ||
|annotation=non-coding (NR_108061, exon 1 of 3) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2319506,EH38E1451816) | |ccre_description=PLS,CTCF-bound (EH38D2319506,EH38E1451816) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.133333 | |cpg_percent=0.133333 | ||
|detailed_annotation= | |detailed_annotation=non-coding (NR_108061, exon 1 of 3) | ||
|distance=-44 | |distance=-44 | ||
|distance_to_tss=102 | |distance_to_tss=102 | ||
|end=17229898 | |end=17229898 | ||
|entrez_id= | |entrez_id=100507347 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.677419 | |gc_percent=0.677419 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=VIM antisense RNA 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000229124 | ||
|nearest_refseq= | |nearest_promoter_id=NR_108061 | ||
|nearest_unigene= | |nearest_refseq=NR_108060 | ||
|nearest_transcripts=BC078172:-86 ENST00000605833.1:-87 NR_108061.1:-87 LF346171:176 MA581748:176 LF346168:377 MA581745:377 ENST00000661048.1:448 | |||
|nearest_unigene=Hs.740502 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=17229868 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 18:18, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2319506,EH38E1451816) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 102 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.133333 |
| GC%: | 0.677419 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |