TSS: Rfhg 123464.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=intron (ENST00000617363.4, intron 1 of 12)
|all_trans=
|annotation=intron (NM_000724, intron 1 of 12)
|ccre_category=dELS
|ccre_category=dELS
|ccre_description=dELS (EH38D2320415,EH38E1452428)
|ccre_description=dELS (EH38D2320415,EH38E1452428)
|chr=chr10
|chr=chr10
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-intron (ENST00000282343.13, intron 2 of 13)
|detailed_annotation=intron (NM_000724, intron 1 of 12)
|distance=
|distance=
|distance_to_tss=-18004
|distance_to_tss=18476
|end=18279203
|end=18279203
|entrez_id=ENSG00000235020
|entrez_id=783
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.400000
|gc_percent=0.400000
|gene_alias=
|gene_alias=CACNLB2{{!}}CAVB2{{!}}MYSB
|gene_description=
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=processed_transcript
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000457058.1
|nearest_ensembl=ENSG00000165995
|nearest_refseq=
|nearest_promoter_id=NM_000724
|nearest_unigene=ENST00000625812
|nearest_refseq=NM_000724
|nearest_transcripts=
|nearest_unigene=Hs.59093
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=18279193
|start=18279194
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 18:20, 13 March 2025

Basic information about the TSS


TSS ID:rfhg_123464.1
Species:human
Chr:chr10
Start:18279194
End:18279203
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS (EH38D2320415,EH38E1452428)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:18476
    Nearest PromoterID:NM_000724
    Entrez ID:783
    Nearest Unigene:Hs.59093
    Nearest Refseq:NM_000724
    Nearest Ensembl:ENSG00000165995
    Gene Name:
    Gene Alias:CACNLB2|CAVB2|MYSB
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.400000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):