TSS: Rfhg 123616.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=TTS ( | |all_trans=LF346202:5 MA581779:5 LF205554:-437 MA441131:-437 | ||
|annotation=TTS (NR_031736) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D2322758,EH38E1453875) | |ccre_description=pELS,CTCF-bound (EH38D2322758,EH38E1453875) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.083333 | |cpg_percent=0.083333 | ||
|detailed_annotation= | |detailed_annotation=TTS (NR_031736) | ||
|distance=5 | |distance=5 | ||
|distance_to_tss=635 | |distance_to_tss=635 | ||
|end=21496012 | |end=21496012 | ||
|entrez_id= | |entrez_id=100302129 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.538462 | |gc_percent=0.538462 | ||
|gene_alias= | |gene_alias=MIRN1915{{!}}hsa-mir-1915 | ||
|gene_description= | |gene_description=microRNA 1915 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000222071 | ||
|nearest_refseq= | |nearest_promoter_id=NR_031736 | ||
|nearest_unigene= | |nearest_refseq=NR_031736 | ||
|nearest_transcripts=LF205554:-437 MA441131:-437 | |||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=21496000 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 18:23, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2322758,EH38E1453875) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 635 |
|---|---|
| Nearest PromoterID: | NR_031736 |
| Entrez ID: | 100302129 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_031736 |
| Nearest Ensembl: | ENSG00000222071 |
| Gene Name: | |
| Gene Alias: | MIRN1915|hsa-mir-1915 |
| Gene Type: | ncRNA |
| CpG%: | 0.083333 |
| GC%: | 0.538462 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |