TSS: Rfhg 124595.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans=LF375450:307 MA611027:307 LF375449:-390 MA611026:-390 | ||
|annotation=intron (NM_002211, intron 1 of 15) | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D2332151,EH38E1460524) | |ccre_description=dELS (EH38D2332151,EH38E1460524) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.062500 | |cpg_percent=0.062500 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_002211, intron 1 of 15) | ||
|distance=307 | |distance=307 | ||
|distance_to_tss= | |distance_to_tss=2747 | ||
|end=32955155 | |end=32955155 | ||
|entrez_id= | |entrez_id=3688 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.470588 | |gc_percent=0.470588 | ||
|gene_alias= | |gene_alias=CD29{{!}}FNRB{{!}}GPIIA{{!}}MDF2{{!}}MSK12{{!}}VLA-BETA{{!}}VLAB | ||
|gene_description= | |gene_description=integrin subunit beta 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000150093 | ||
|nearest_refseq= | |nearest_promoter_id=NM_133376 | ||
|nearest_unigene= | |nearest_refseq=NM_002211 | ||
|nearest_transcripts=LF375449:-390 MA611026:-390 | |||
|nearest_unigene=Hs.643813 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=32955139 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 18:41, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2332151,EH38E1460524) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2747 |
|---|---|
| Nearest PromoterID: | NM_133376 |
| Entrez ID: | 3688 |
| Nearest Unigene: | Hs.643813 |
| Nearest Refseq: | NM_002211 |
| Nearest Ensembl: | ENSG00000150093 |
| Gene Name: | |
| Gene Alias: | CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB |
| Gene Type: | protein-coding |
| CpG%: | 0.062500 |
| GC%: | 0.470588 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |