TSS: Rfhg 126640.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=exon ( | |all_trans=LF322524:0 MA558101:0 | ||
|annotation=exon (NM_002778, exon 3 of 14) | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D2358472,EH38E1477137) | |ccre_description=dELS,CTCF-bound (EH38D2358472,EH38E1477137) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.038462 | |cpg_percent=0.038462 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_002778, exon 3 of 14) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=19364 | ||
|end=71831926 | |end=71831926 | ||
|entrez_id= | |entrez_id=5660 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.493671 | |gc_percent=0.493671 | ||
|gene_alias= | |gene_alias=GLBA{{!}}SAP1 | ||
|gene_description= | |gene_description=prosaposin | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE{{!}}NETCAGE{{!}}C1CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000197746 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001042465 | ||
|nearest_unigene= | |nearest_refseq=NM_002778 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.523004 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA013844{{!}}PRJNA4843412{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start= | |start=71831848 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=LF322524 MA558101 | |transcript_name=LF322524 MA558101 | ||
|tss_cluster_detected=4 | |||
|tss_id=rfhg_126640.1 | |tss_id=rfhg_126640.1 | ||
|tss_id_v3=hg_109937.1 | |tss_id_v3=hg_109937.1 | ||
Latest revision as of 19:18, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|DRA013844|PRJNA4843412|PRJDB5282 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|NETCAGE|C1CAGE | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2358472,EH38E1477137) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 19364 |
|---|---|
| Nearest PromoterID: | NM_001042465 |
| Entrez ID: | 5660 |
| Nearest Unigene: | Hs.523004 |
| Nearest Refseq: | NM_002778 |
| Nearest Ensembl: | ENSG00000197746 |
| Gene Name: | |
| Gene Alias: | GLBA|SAP1 |
| Gene Type: | protein-coding |
| CpG%: | 0.038462 |
| GC%: | 0.493671 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |