TSS: Rfhg 129074.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=exon ( | |all_trans=KJ903917:-33 AK300856:-184 AK313485:-204 ENST00000622383.1:-212 BC025788:-212 ENST00000344586.9:-223 NM_145285.3:-223 | ||
|annotation=exon (NM_145285, exon 1 of 2) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D2381483,EH38E1492922) | |ccre_description=pELS (EH38D2381483,EH38E1492922) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_145285, exon 1 of 2) | ||
|distance=-33 | |distance=-33 | ||
|distance_to_tss= | |distance_to_tss=227 | ||
|end=99533174 | |end=99533174 | ||
|entrez_id= | |entrez_id=159296 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.400000 | |gc_percent=0.400000 | ||
|gene_alias= | |gene_alias=CSX3{{!}}NK2.3{{!}}NKX2.3{{!}}NKX2C{{!}}NKX4-3 | ||
|gene_description= | |gene_description=NK2 homeobox 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
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|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000119919 | ||
|nearest_refseq= | |nearest_promoter_id=NM_145285 | ||
|nearest_unigene= | |nearest_refseq=NM_145285 | ||
|nearest_transcripts=AK300856:-184 AK313485:-204 ENST00000622383.1:-212 BC025788:-212 ENST00000344586.9:-223 NM_145285.3:-223 | |||
|nearest_unigene=Hs.243272 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=99533165 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 20:02, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D2381483,EH38E1492922) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 227 |
|---|---|
| Nearest PromoterID: | NM_145285 |
| Entrez ID: | 159296 |
| Nearest Unigene: | Hs.243272 |
| Nearest Refseq: | NM_145285 |
| Nearest Ensembl: | ENSG00000119919 |
| Gene Name: | |
| Gene Alias: | CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |