TSS: Rfhg 130099.1: Difference between revisions
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000459738.5) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2390011,EH38E1498469) |chr=chr10 |cpg_percent=0.000000 |de...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=DQ575250:17 AK291488:41 ENST00000356080.9:-89 NM_001121.4:-89 NM_016824.5:-89 NM_001320594.2:-89 BX648016:-89 ENST00000277900.12:-109 BC062559:-110 BX647403:-120 ENST00000487085.5:129 ENST00000484622.5:129 ENST00000459738.5:130 U37122:132 BC043143:138 ENST00000495661.5:152 ENST00000497125.5:152 ENST00000475954.5:173 | ||
|annotation=promoter-TSS (NM_016824) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2390011,EH38E1498469) | |ccre_description=PLS,CTCF-bound (EH38D2390011,EH38E1498469) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_016824) | ||
|distance=17 | |distance=17 | ||
|distance_to_tss= | |distance_to_tss=92 | ||
|end=110008079 | |end=110008079 | ||
|entrez_id= | |entrez_id=120 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.571429 | |gc_percent=0.571429 | ||
|gene_alias= | |gene_alias=ADDL{{!}}CPSQ3 | ||
|gene_description= | |gene_description=adducin 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000148700 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001320594 | ||
|nearest_unigene= | |nearest_refseq=NM_001121 | ||
|nearest_transcripts=AK291488:41 ENST00000356080.9:-89 NM_001121.4:-89 NM_016824.5:-89 NM_001320594.2:-89 BX648016:-89 ENST00000277900.12:-109 BC062559:-110 BX647403:-120 ENST00000487085.5:129 ENST00000484622.5:129 ENST00000459738.5:130 U37122:132 BC043143:138 ENST00000495661.5:152 ENST00000497125.5:152 ENST00000475954.5:173 | |||
|nearest_unigene=Hs.501012 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=110008073 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 20:21, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2390011,EH38E1498469) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 92 |
|---|---|
| Nearest PromoterID: | NM_001320594 |
| Entrez ID: | 120 |
| Nearest Unigene: | Hs.501012 |
| Nearest Refseq: | NM_001121 |
| Nearest Ensembl: | ENSG00000148700 |
| Gene Name: | |
| Gene Alias: | ADDL|CPSQ3 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "AK291488:41 ENST00000356080.9:-89 NM_001121.4:-89 NM_016824.5:-89 NM_001320594.2:-89 BX648016:-89 ENST00000277900.12:-109 BC062559:-110 BX647403:-120 ENST00000487085.5:129 ENST00000484622.5:129 ENST00000459738.5:130 U37122:132 BC043143:138 ENST00000495661.5:152 ENST00000497125.5:152 ENST00000475954.5:173" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.