TSS: Rfhg 131089.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NM_206860.3:0 NM_006997.4:0 NM_001291878.2:0 ENST00000368999.5:-7 ENST00000369004.7:129 BC141837:129 BC142673:129 ENST00000360561.7:-171 BC039311:-171 ENST00000260733.7:199 AF095791:199 | ||
|annotation=promoter-TSS (NM_006997) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2401017,EH38E1506184) | |ccre_description=PLS,CTCF-bound (EH38D2401017,EH38E1506184) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.083333 | |cpg_percent=0.083333 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_006997) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-9 | ||
|end=122163645 | |end=122163645 | ||
|entrez_id= | |entrez_id=10579 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.571429 | |gc_percent=0.571429 | ||
|gene_alias= | |gene_alias=AZU-1{{!}}ECTACC | ||
|gene_description= | |gene_description=transforming acidic coiled-coil containing protein 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000138162 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001291878 | ||
|nearest_unigene= | |nearest_refseq=NM_006997 | ||
|nearest_transcripts=ENST00000368999.5:-7 ENST00000369004.7:129 BC141837:129 BC142673:129 ENST00000360561.7:-171 BC039311:-171 ENST00000260733.7:199 AF095791:199 | |||
|nearest_unigene=Hs.501252 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD | |||
|species=human | |species=human | ||
|start= | |start=122163597 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 20:41, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2401017,EH38E1506184) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_001291878 |
| Entrez ID: | 10579 |
| Nearest Unigene: | Hs.501252 |
| Nearest Refseq: | NM_006997 |
| Nearest Ensembl: | ENSG00000138162 |
| Gene Name: | |
| Gene Alias: | AZU-1|ECTACC |
| Gene Type: | protein-coding |
| CpG%: | 0.083333 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |