TSS: Rfhg 131936.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000368554.8, intron 4 of 7) |ccre_category=dELS |ccre_description=dELS (EH38D2412065,EH38E1513074) |chr=chr10 |cpg_percent=0.000000 |de...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans= | ||
|annotation=Intergenic | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS (EH38D2412065,EH38E1513074) | |ccre_description=dELS (EH38D2412065,EH38E1513074) | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=LTR12F{{!}}LTR{{!}}ERV1 | ||
|distance= | |distance= | ||
|distance_to_tss=-3781 | |distance_to_tss=-3781 | ||
|end=133316122 | |end=133316122 | ||
|entrez_id= | |entrez_id=10844 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.444444 | |gc_percent=0.444444 | ||
|gene_alias= | |gene_alias=ALP4{{!}}GCP-2{{!}}GCP2{{!}}Grip103{{!}}SPBC97{{!}}SPC97{{!}}Spc97p{{!}}h103p{{!}}hGCP2{{!}}hSpc97 | ||
|gene_description= | |gene_description=tubulin gamma complex associated protein 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000130640 | ||
|nearest_refseq= | |nearest_promoter_id=NR_046330 | ||
|nearest_unigene= | |nearest_refseq=NM_006659 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.523370 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=133316114 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 20:56, 13 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2412065,EH38E1513074) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -3781 |
|---|---|
| Nearest PromoterID: | NR_046330 |
| Entrez ID: | 10844 |
| Nearest Unigene: | Hs.523370 |
| Nearest Refseq: | NM_006659 |
| Nearest Ensembl: | ENSG00000130640 |
| Gene Name: | |
| Gene Alias: | ALP4|GCP-2|GCP2|Grip103|SPBC97|SPC97|Spc97p|h103p|hGCP2|hSpc97 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.444444 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |