TSS: Rfhg 133028.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000430034.1) |ccre_category=N |ccre_description=N |chr=chr11 |cpg_percent=0.000000 |detailed_annotation=3prime_overlapping_ncRNA-...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans=MN309221:-377 LF370727:-392 MA606304:-392 | ||
|annotation=non-coding (NR_003512, exon 7 of 7) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=non-coding (NR_003512, exon 7 of 7) | ||
|distance=-377 | |distance=-377 | ||
|distance_to_tss= | |distance_to_tss=3486 | ||
|end=2130728 | |end=2130728 | ||
|entrez_id= | |entrez_id=619552 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.363636 | |gc_percent=0.363636 | ||
|gene_alias= | |gene_alias=MIRN483{{!}}hsa-mir-483{{!}}mir-483 | ||
|gene_description= | |gene_description=microRNA 483 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000207805 | ||
|nearest_refseq= | |nearest_promoter_id=NR_030158 | ||
|nearest_unigene= | |nearest_refseq=NR_030158 | ||
|nearest_transcripts=LF370727:-392 MA606304:-392 | |||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=2130718 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 21:18, 13 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 3486 |
|---|---|
| Nearest PromoterID: | NR_030158 |
| Entrez ID: | 619552 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_030158 |
| Nearest Ensembl: | ENSG00000207805 |
| Gene Name: | |
| Gene Alias: | MIRN483|hsa-mir-483|mir-483 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.363636 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |