TSS: Rfhg 133914.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NR_002977.1:-84 | ||
|annotation=promoter-TSS (NR_002977) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS (EH38D2420113,EH38E1518575) | |ccre_description=PLS (EH38D2420113,EH38E1518575) | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_002977) | ||
|distance=-84 | |distance=-84 | ||
|distance_to_tss=85 | |distance_to_tss=85 | ||
|end=8685526 | |end=8685526 | ||
|entrez_id= | |entrez_id=677826 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.750000 | |gc_percent=0.750000 | ||
|gene_alias= | |gene_alias=ACA3-2{{!}}SNORA45{{!}}SNORA45B | ||
|gene_description= | |gene_description=small nucleolar RNA, H/ACA box 3B | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 21: | Line 22: | ||
|gene_type=snoRNA | |gene_type=snoRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=STRIPE-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000212607 | ||
|nearest_refseq= | |nearest_promoter_id=NR_002977 | ||
|nearest_unigene= | |nearest_refseq=NR_002977 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.745552 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA597322 | |||
|species=human | |species=human | ||
|start= | |start=8685523 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 21:35, 13 March 2025
Basic information about the TSS
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| Source datasets | PRJNA597322 | |||||||||||||
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| Protocol | STRIPE-seq | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2420113,EH38E1518575) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 85 |
|---|---|
| Nearest PromoterID: | NR_002977 |
| Entrez ID: | 677826 |
| Nearest Unigene: | Hs.745552 |
| Nearest Refseq: | NR_002977 |
| Nearest Ensembl: | ENSG00000212607 |
| Gene Name: | |
| Gene Alias: | ACA3-2|SNORA45|SNORA45B |
| Gene Type: | snoRNA |
| CpG%: | 0.000000 |
| GC%: | 0.750000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |